<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//TaxonX//DTD Taxonomic Treatment Publishing DTD v0 20100105//EN" "../../nlm/tax-treatment-NS0.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:tp="http://www.plazi.org/taxpub" article-type="research-article" dtd-version="3.0" xml:lang="en">
  <front>
    <journal-meta>
      <journal-id journal-id-type="publisher-id">102</journal-id>
      <journal-id journal-id-type="index">urn:lsid:arphahub.com:pub:73abe0ce-d97c-5d7c-bee5-b8e6e6fe6a17</journal-id>
      <journal-title-group>
        <journal-title xml:lang="en">ARPHA Preprints</journal-title>
        <abbrev-journal-title xml:lang="en">preprints</abbrev-journal-title>
      </journal-title-group>
      <publisher>
        <publisher-name>Pensoft Publishers</publisher-name>
      </publisher>
    </journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.3897/arphapreprints.e109313</article-id>
      <article-id pub-id-type="publisher-id">109313</article-id>
      <article-categories>
        <subj-group subj-group-type="heading">
          <subject>Research Article</subject>
        </subj-group>
        <subj-group subj-group-type="biological_taxon">
          <subject>Animalia</subject>
          <subject>Arthropoda</subject>
          <subject>Coleoptera</subject>
          <subject>Hexapoda</subject>
          <subject>Insecta</subject>
          <subject>Invertebrata</subject>
        </subj-group>
        <subj-group subj-group-type="scientific_subject">
          <subject>Bioinformatics</subject>
          <subject>Biological Invasions</subject>
          <subject>DNA barcoding</subject>
          <subject>DNA reference libraries</subject>
          <subject>Molecular ecology</subject>
        </subj-group>
        <subj-group subj-group-type="geographical_area">
          <subject>Americas</subject>
          <subject>China</subject>
          <subject>Europe</subject>
          <subject>North America</subject>
          <subject>Southern Europe and Mediterranean</subject>
          <subject>USA and Canada</subject>
          <subject>Western Europe</subject>
        </subj-group>
      </article-categories>
      <title-group>
        <article-title>Molecular biosurveillance of wood-boring cerambycid beetles using DNA metabarcoding</article-title>
      </title-group>
      <contrib-group content-type="authors">
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Veillat</surname>
            <given-names>Lois</given-names>
          </name>
          <email xlink:type="simple">lois.veillat@inrae.fr</email>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Boyer</surname>
            <given-names>Stephane</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-0750-4864</uri>
          <xref ref-type="aff" rid="A2">2</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Querejeta Coma</surname>
            <given-names>Marina</given-names>
          </name>
          <xref ref-type="aff" rid="A3">3</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Magnoux</surname>
            <given-names>Emmanuelle</given-names>
          </name>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Roques</surname>
            <given-names>Alain</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0002-3734-3918</uri>
          <xref ref-type="aff" rid="A4">4</xref>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="no">
          <name name-style="western">
            <surname>Lopez-Vaamonde</surname>
            <given-names>Carlos</given-names>
          </name>
          <uri content-type="orcid">https://orcid.org/0000-0003-2278-2368</uri>
          <xref ref-type="aff" rid="A1">1</xref>
        </contrib>
        <contrib contrib-type="author" corresp="yes">
          <name name-style="western">
            <surname>Roux</surname>
            <given-names>Géraldine</given-names>
          </name>
          <email xlink:type="simple">geraldine.roux@univ-orleans.fr</email>
          <xref ref-type="aff" rid="A5">5</xref>
        </contrib>
      </contrib-group>
      <aff id="A1">
        <label>1</label>
        <addr-line content-type="verbatim">INRAE, Orléans, France</addr-line>
        <institution>INRAE</institution>
        <addr-line content-type="city">Orléans</addr-line>
        <country>France</country>
      </aff>
      <aff id="A2">
        <label>2</label>
        <addr-line content-type="verbatim">Tours University, Tours, France</addr-line>
        <institution>Tours University</institution>
        <addr-line content-type="city">Tours</addr-line>
        <country>France</country>
      </aff>
      <aff id="A3">
        <label>3</label>
        <addr-line content-type="verbatim">IRBI, Tours, France</addr-line>
        <institution>IRBI</institution>
        <addr-line content-type="city">Tours</addr-line>
        <country>France</country>
      </aff>
      <aff id="A4">
        <label>4</label>
        <addr-line content-type="verbatim">IFOPE, Sino-French Joint Laboratory for Invasive Forest Pests in Eurasia, INRAE URZF and Beijing Forestry University, Beijing, China</addr-line>
        <institution>IFOPE, Sino-French Joint Laboratory for Invasive Forest Pests in Eurasia, INRAE URZF and Beijing Forestry University</institution>
        <addr-line content-type="city">Beijing</addr-line>
        <country>China</country>
      </aff>
      <aff id="A5">
        <label>5</label>
        <addr-line content-type="verbatim">Université d’Orléans, Orléans, France</addr-line>
        <institution>Université d’Orléans</institution>
        <addr-line content-type="city">Orléans</addr-line>
        <country>France</country>
      </aff>
      <author-notes>
        <fn fn-type="corresp">
          <p>Corresponding authors: Lois Veillat (<email xlink:type="simple">lois.veillat@inrae.fr</email>), Géraldine Roux (<email xlink:type="simple">geraldine.roux@univ-orleans.fr</email>).</p>
        </fn>
        <fn fn-type="edited-by">
          <p>Academic editor: </p>
        </fn>
      </author-notes>
      <pub-date pub-type="collection">
        <year>2023</year>
      </pub-date>
      <pub-date pub-type="epub">
        <day>12</day>
        <month>07</month>
        <year>2023</year>
      </pub-date>
      <volume>4</volume>
      <uri content-type="arpha" xlink:href="http://openbiodiv.net/A5CDB592-DEA7-53B8-80D1-CB92309AB98E">A5CDB592-DEA7-53B8-80D1-CB92309AB98E</uri>
      <history>
        <date date-type="received">
          <day>10</day>
          <month>07</month>
          <year>2023</year>
        </date>
        <date date-type="accepted">
          <day>10</day>
          <month>07</month>
          <year>2023</year>
        </date>
      </history>
      <permissions>
        <copyright-statement>Lois Veillat, Stephane Boyer, Marina Querejeta Coma, Emmanuelle Magnoux, Alain Roques, Carlos Lopez-Vaamonde, Géraldine Roux</copyright-statement>
        <license license-type="creative-commons-attribution" xlink:href="http://creativecommons.org/licenses/by/4.0/" xlink:type="simple">
          <license-p>This is an open access preprint distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
        </license>
      </permissions>
      <abstract>
        <label>Abstract</label>
        <p>Individual sorting and identification of thousands of insects collected in mass trapping biosurveillance programs is a labor intensive and time-consuming process. Metabarcoding, which allows for the simultaneous identification of multiple individuals in a single mixed sample, has the potential to expedite this process. However, detecting all the species present in a bulk sample can be challenging. In this study, we quantified the effectiveness of metabarcoding at detecting all species in six different mock communities of xylophagous cerambycid beetles. No significant differences in the number of species detected were observed between MinION, Illumina, and IonTorrent sequencing technologies. However, a greater number of individuals was detected and identified to species using MinION. In addition, the proportion of reads assigned to the species level was higher with Illumina technology. The three sequencing technologies also showed similar results in detecting and identifying closely related species and species at low abundance. The capture method greatly influences sample preservation and detection. Indeed, individuals captured using monopropylene and water had both lower DNA concentration and species detection rates compared to individuals killed using just an insecticide without any collection medium.<o:p/></p>
      </abstract>
    </article-meta>
  </front>
</article>
