ARPHA Preprints, doi: 10.3897/arphapreprints.e129598
Open-Source Software Integration: A Tutorial on Species Distribution Mapping and Ecological Niche Modelling
expand article infoZoe Anne Ryan§|, Emily Kathleen Clark§, Beatrice Cundiff, Joslyn Althea Nichols#, Maya Mahoney|, Nkosi Michael Evans§¤, Thomas Campbell¤, Danny Kreider«, Matt von Konrat§
‡ University of Wisconsin - Madison, Madison, United States of America§ Field Museum, Gantz Family Collections Center, Chicago, United States of America| DePaul University, Chicago, United States of America¶ University of California, Berkeley, Berkeley, United States of America# Arizona State University, Sussex, United States of America¤ Northeastern Illinois University, Chicago, United States of America« University of Illinois, Chicago, Chicago, United States of America
Open Access
Abstract

Over the last decade, access to global data has become increasingly critical for research, allowing insights into diverse biological, environmental, and societal questions at a macro scale. Digitization has greatly enhanced the use of herbarium data in the analysis of species distribution data and ecological niche modeling. Yet, sources on modeling and mapping methodology using open source software is greatly lacking for beginners. We have created a replicable and thorough tutorial to visualize species occurrence data and exploratory analysis that was developed by undergraduates with broad backgrounds and levels of expereince. This tutorial integrates the open-source programs QGIS, MaxEnt, and R to develop distribution maps, using bryophytes as a case study, to promote the accessibility of open source software and remote access learning. This tutorial has already set the foundation for further research into distribution modeling of rare Illinois bryophytes to better understand the potential impact of climate change.

Keywords
Bryophytes, QGIS, MaxEnt, R, Rstudio, tutorial, open source, ecological niche modeling, species distribution maps