ARPHA Preprints, doi: 10.3897/arphapreprints.e155925
ERGA-BGE genome of Coenonympha oedippus: an IUCN endangered European butterfly species occurring in two ecotypes
expand article infoTatjana Čelik, Tjaša Lokovšek, Elena Bužan§|, Astrid Böhne, Rita Monteiro, Rosa Fernández#, Nuria Escudero#, Marta Gut¤«, Laura Aguilera»˄, Francisco Câmara Ferreira¤«, Fernando Cruz¤«, Jèssica Gómez-Garrido¤˅, Tyler S Alioto¤«, Leanne Haggerty¦, Swati Sinha¦, Fergal Martin¦, Chiara Bortoluzziˀˁ
‡ ZRC SAZU, Jovan Hadži Institute of Biology, Novi trg 2, SI-1000, Ljubljana, Slovenia§ Faculty of Environmental Protection, Trg mladosti 7, 3320, Velenje, Slovenia| University of Primorska, Faculty of Mathematics, Natural Sciences and Information Technologies, Glagoljaška 8, SI-6000, Koper, Slovenia¶ Leibniz Institute for the Analysis of Biodiversity Change, Museum Koenig Bonn, Adenauerallee 127, 53113, Bonn, Germany# Metazoa Phylogenomics Lab, Institute for Evolutionary Biology (CSIC-UPF). Passeig marítim de la Barceloneta 37-49. 08003, Barcelona, Spain¤ Centro Nacional de Análisis Genómico (CNAG), Baldiri Reixac 4, 08028, Barcelona, Spain« Universitat de Barcelona (UB), 08028, Barcelona, Spain» Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain˄ Universitat de Barcelona (UB), Barcelona, Spain˅ Universitat de Barcelona (UB), 08028 Barcelona, Barcelona, Spain¦ European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, United Kingdomˀ University of Florence, Department of Biology, Via Madonna del Piano 6, 50019 Sesto Fiorentino, Florence, Italyˁ Department of Aquatic Ecology, Eawag, Überlandstrasse 133, 8600, Dübendorf, Switzerland₵ SIB Swiss Institute of Bioinformatics, Environmental Bioinformatics group, Amphipôle, Quartier UNIL-Sorge, 1015, Lausanne, Switzerland
Open Access
Abstract

The reference genome of the False ringlet (Coenonympha oedippus) will serve as a valuable resource for uncovering the genetic mechanism underlying the species′ adaptability to two ecologically distinct habitats. Through this genome we might be able to determine whether (i) each ecotype is monophyletic, indicating that the ecological divergence represents an early stage of speciation, (ii) the ecotypes have evolved through divergent evolution of habitat preference, or (iii) the differences between ecotypes are solely due to phenotypic plasticity or epigenetic variation. This reference genome is also a prerequisite for the planning, design, and implementation of conservation measures for this endangered species, taking into account its intraspecific diversity. Furthermore, it holds broader implications for population genomic studies of the species-rich genus Coenonympha, which includes some of the most endangered butterfly taxa in Europe. The complete genome sequence was assembled into 30 contiguous chromosomal pseudomolecules (sex chromosomes included). This chromosome-level assembly encompasses 0.39 Gb, composed of 385 contigs and 62 scaffolds, with contig and scaffold N50 values of 2.8 Mb and 14.2 Mb, respectively.

Keywords
Coenonympha oedippus, genome assembly, European Reference Genome Atlas, Biodiversity Genomics Europe, Satyrinae, False ringlet
login to comment